STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15286.1Spore coat polysaccharide biosynthesis protein F (spsF). (252 aa)    
Predicted Functional Partners:
AHC15285.1
Cytidylyltransferase domain protein.
  
 0.994
AHC15578.1
N-acetylneuraminate synthase.
 
  
 0.902
AHC15287.1
Hypothetical protein.
   
 
 0.838
AHC15288.1
Hypothetical protein.
  
    0.757
AHC14466.1
Putative aminotransferase, DegT family; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.755
AHC14548.1
Putative aminotransferase, DegT family; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.720
AHC15284.1
Hypothetical protein.
 
     0.699
AHC14612.1
Hypothetical protein.
 
     0.641
AHC14576.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
    0.602
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
    
   0.591
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.