Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC15322.1Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter. (336 aa)    
Predicted Functional Partners:
AHC15321.1
Hypothetical protein; Belongs to the methyltransferase superfamily.
       0.773
AHC15323.1
Hypothetical protein.
       0.773
AHC15388.1
Sodium/calcium antiporter.
  
     0.599
AHC16535.1
Hypothetical protein.
 
  
 0.557
AHC15324.1
Transcriptional regulator, TetR family.
       0.553
AHC15325.1
Hypothetical protein.
       0.488
AHC15320.1
Putative aminopeptidase.
       0.456
AHC15318.1
Hypothetical protein.
       0.452
AHC15319.1
Hypothetical protein.
       0.452
AHC15317.1
Thymidine kinase.
       0.403
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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