STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15337.1Aspartate ammonia-lyase. (605 aa)    
Predicted Functional Partners:
AHC15103.1
Asparaginase.
  
 
 0.957
AHC14843.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
 0.921
AHC14374.1
Biosynthetic Aromatic amino acid aminotransferase alpha, Aspartate aminotransferase.
    
 0.912
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.908
AHC15221.1
Adenylosuccinate lyase.
     
 0.908
AHC14805.1
Aspartate carbamoyltransferase/ Aspartate carbamoyltransferase regulatory chain (PyrI).
     
  0.900
AHC16146.1
2-oxoglutarate oxidoreductase, alpha subunit.
  
 0.868
AHC15336.1
[FeFe]-hydrogenase maturation protein HydE.
 
 
   0.852
AHC15338.1
[FeFe]-hydrogenase maturation protein HydF.
 
  
 0.836
AHC15470.1
Citrate synthase (si); Belongs to the citrate synthase family.
     
 0.836
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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