Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC15349.1Transcriptional regulator, TetR family. (372 aa)    
Predicted Functional Partners:
AHC15348.1
Beta-ketoadipate enol-lactone hydrolase.
 
   
 0.825
AHC15350.1
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII.
       0.773
AHC15344.1
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII.
 
     0.709
AHC14064.1
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII.
  
     0.611
AHC15346.1
4-hydroxybutyrate coenzyme A transferase.
 
     0.549
AHC15347.1
3-ketoacyl-CoA thiolase, Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.536
AHC14062.1
Branched-chain amino acid ABC transporter, amino acid-binding protein.
  
     0.447
AHC14846.1
Peptidyl-tRNA hydrolase.
  
    0.415
AHC16831.1
Peptidyl-tRNA hydrolase.
  
    0.415
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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