STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15356.1Putative protein-tyrosine phosphatase. (277 aa)    
Predicted Functional Partners:
AHC16069.1
Low molecular weight protein tyrosine phosphatase.
     
 0.912
AHC13572.1
Peptidyl-prolyl cis-trans isomerase.
    
 
 0.728
AHC13908.1
Sulfate permease family protein.
   
   0.722
AHC15908.1
Sulfate permease.
   
   0.722
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
   0.717
AHC14444.1
Hypothetical protein.
   
  0.714
AHC15629.1
Oxidoreductase, short-chain dehydrogenase/reductase family.
  
 
   0.591
AHC15355.1
Putative membrane protein.
   
   0.584
AHC15357.1
Hypothetical protein.
       0.553
AHC13479.1
Hypothetical protein.
    
   0.535
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.