Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15439.1Mobile element protein. (111 aa)    
Predicted Functional Partners:
AHC15438.1
Mobile element protein.
 
     0.792
AHC15440.1
Hypothetical protein.
       0.773
AHC13786.1
Mobile element protein.
  
     0.547
AHC15437.1
Hypothetical protein.
       0.451
AHC13784.1
Mobile element protein.
  
     0.435
AHC15441.1
Mobile element protein.
  
    0.429
AHC15442.1
Death on curing protein, Doc toxin.
       0.420
AHC14434.1
Mobile element protein.
  
     0.412
AHC14506.1
Mobile element protein.
  
     0.412
AHC16551.1
Mobile element protein.
  
     0.412
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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