Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15512.1L-proline glycine betaine ABC transport system permease protein ProV. (365 aa)    
Predicted Functional Partners:
AHC15514.1
Osmoprotectant ABC transporter binding protein YehZ.
 
 0.999
AHC15511.1
Osmoprotectant ABC transporter inner membrane protein YehW.
 0.998
AHC15513.1
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 0.998
AHC16277.1
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
     
0.883
AHC14476.1
ABC transporter permease protein.
 
      0.821
AHC14040.1
ATPase component of energizing module of ECF transporter.
 
    
0.775
AHC13559.1
ABC transporter, ATP-binding protein.
 
     
0.733
AHC16278.1
Oligopeptide transport ATP-binding protein OppF.
 
 
   
0.664
AHC15827.1
Dipeptide transport system permease protein DppC.
 
    
 0.617
AHC15829.1
ABC transporter ATP-binding protein.
 
   
0.504
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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