Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15521.1Hypothetical protein. (672 aa)    
Predicted Functional Partners:
AHC16050.1
Hypothetical protein.
 
 
 0.960
AHC15522.1
Hypothetical protein.
 
 
 0.957
AHC15332.1
Hypothetical protein.
 
 
0.956
AHC14706.1
Hypothetical protein.
 
 
 0.945
AHC15375.1
Hypothetical protein.
 
 
 0.943
AHC15616.1
Sensor histidine kinase/response regulator.
 
 
 0.940
AHC15537.1
Hypothetical protein.
 
 
 0.939
AHC16393.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.924
AHC15617.1
Response regulatory protein.
 
 
 0.913
AHC16043.1
Hypothetical protein.
  
 
 0.889
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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