Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC15526.1Phytoene desaturase, neurosporene or lycopene producing/ 4,4'-diapolycopene oxidase. (502 aa)    
Predicted Functional Partners:
AHC15527.1
Phytoene synthase.
  
 0.993
AHC16390.1
Beta-carotene hydroxylase.
 
   
 0.895
AHC15525.1
Hypothetical protein.
 
   
 0.887
AHC13825.1
Lycopene cyclase.
 
   
 0.839
AHC15528.1
Hypothetical protein.
       0.701
AHC15077.1
Cryptochrome; Belongs to the DNA photolyase family.
 
  
 0.657
AHC15078.1
Cryptochrome.
 
  
 0.636
AHC16440.1
Hypothetical protein.
 
  
 0.573
AHC15529.1
Hypothetical protein.
       0.570
fni
Hydroxymethylglutaryl-CoA reductase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). Belongs to the IPP isomerase type 2 family.
  
  
 0.450
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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