STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15560.1Rubredoxin. (53 aa)    
Predicted Functional Partners:
AHC15561.1
Ferritin; Iron-storage protein.
  
  
 0.745
AHC15113.1
Superoxide reductase.
  
  
 0.720
AHC15793.1
Flavoprotein.
 
  
 0.574
AHC15562.1
Hypothetical protein.
       0.559
AHC14219.1
Putative CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.516
AHC16649.1
Alkane-1 monooxygenase.
 
  
 0.475
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
     
 0.422
AHC15565.1
OmpA family protein.
  
    0.419
AHC15563.1
Hypothetical protein.
       0.409
AHC15564.1
Membrane-bound lytic murein transglycosylase D precursor.
       0.409
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.