STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15578.1N-acetylneuraminate synthase. (403 aa)    
Predicted Functional Partners:
AHC16489.1
UDP-N-acetylglucosamine 2-epimerase.
  
 0.926
AHC16487.1
N-Acetylneuraminate cytidylyltransferase.
  
 0.921
AHC15286.1
Spore coat polysaccharide biosynthesis protein F (spsF).
 
  
 0.902
AHC16488.1
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase.
 
  
 0.874
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.800
AHC15285.1
Cytidylyltransferase domain protein.
 
  
 0.790
AHC14548.1
Putative aminotransferase, DegT family; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.783
AHC16491.1
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.778
AHC14612.1
Hypothetical protein.
 
  
 0.764
AHC16490.1
4-amino-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) acetyltrasferase.
     0.748
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.