Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AHC15579.1Transcriptional regulator, GntR family. (133 aa)    
Predicted Functional Partners:
AHC15918.1
ABC transporter, ATP-binding protein.
 
  
 0.708
AHC15580.1
Putative membrane protease.
 
    0.589
AHC16287.1
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.548
AHC15581.1
ABC transporter, ATP-binding protein.
  
  
 0.531
AHC15582.1
ABC transporter, permease protein.
  
  
 0.513
AHC15583.1
ABC-type transport system, involved in lipoprotein release, permease component.
  
  
 0.507
AHC16820.1
Nicotinamide-nucleotide adenylyltransferase, NadR family/ Ribosylnicotinamide kinase.
   
    0.507
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.485
AHC15578.1
N-acetylneuraminate synthase.
       0.485
AHC16080.1
NAD-dependent protein deacetylase of SIR2 family.
  
    0.445
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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