Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15662.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
AHC15661.1
MinD superfamily P-loop ATPase.
 
     0.926
AHC15660.1
Cobyrinic acid ac-diamide synthase.
 
     0.924
AHC15659.1
Glycine-rich cell wall structural protein precursor.
 
    0.873
AHC15925.1
Hypothetical protein.
  
     0.775
AHC15658.1
Hypothetical protein.
       0.773
AHC15663.1
Hypothetical protein.
       0.464
AHC15664.1
Hypothetical protein.
       0.464
AHC15390.1
7,8 dihydropteroate synthase (methanopterin).
 
     0.426
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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