STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15679.1ABC transporter, periplasmic substrate-binding protein YnjB. (433 aa)    
Predicted Functional Partners:
AHC15680.1
Putative ABC-transporter transport protein.
 
  
  0.991
AHC15681.1
Hypothetical protein.
 
  
  0.991
AHC15676.1
Putative phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.904
AHC15678.1
Putrescine transport ATP-binding protein PotA.
 
     0.863
AHC13914.1
DedA family protein, putative.
 
  
 0.783
AHC15677.1
Putative sterol desaturase.
 
     0.645
AHC15569.1
Exodeoxyribonuclease III.
      0.509
AHC16709.1
Hypothetical protein.
 
     0.427
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.