STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15735.1Putative oxidoreductase. (369 aa)    
Predicted Functional Partners:
AHC15734.1
Chromosome (plasmid) partitioning protein ParA.
       0.773
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    
 0.736
AHC14784.1
Galactokinase; Belongs to the GHMP kinase family.
 
 
 0.634
AHC15952.1
Galactokinase; Belongs to the GHMP kinase family.
 
 
 0.631
AHC14466.1
Putative aminotransferase, DegT family; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.603
AHC16481.1
Aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.595
AHC15796.1
Hypothetical protein.
  
 
 0.576
AHC15732.1
Alcohol dehydrogenase.
  
 
 0.565
AHC16491.1
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.551
AHC15655.1
Proline dehydrogenase(Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.538
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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