STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15740.1Xylose ABC transporter, periplasmic xylose-binding protein XylF. (328 aa)    
Predicted Functional Partners:
AHC15736.1
L-arabinose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
AHC15739.1
Xylose ABC transporter, periplasmic xylose-binding protein XylF.
 
  
 
0.951
AHC15737.1
D-xylose transport ATP-binding protein XylG.
  
 0.842
AHC15742.1
Two-component response regulator.
 
     0.815
AHC15744.1
Autolysin sensor kinase.
 
   
 0.764
AHC14488.1
Xylose-responsive transcription regulator, ROK family.
 
     0.683
AHC13935.1
Xylose-responsive transcription regulator, ROK family.
 
     0.674
AHC16433.1
Putative ROK-family transcriptional regulator.
 
     0.634
AHC15985.1
Putative ROK-family transcriptional regulator.
 
     0.523
AHC16432.1
Extracellular solute-binding protein, family 1.
  
  
 0.476
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.