STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15783.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (56 aa)    
Predicted Functional Partners:
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.790
AHC16225.1
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.766
AHC16146.1
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.648
AHC15784.1
Hypothetical protein.
       0.572
AHC13840.1
2-oxoglutarate oxidoreductase, gamma subunit.
  
 
 0.470
AHC14377.1
Indolepyruvate oxidoreductase subunit IorA.
  
 
 0.470
AHC13718.1
Periplasmic [Fe] hydrogenase large subunit.
     
 0.441
AHC13978.1
Periplasmic [Fe] hydrogenase.
  
  
 0.427
srkA
YihE protein, required for LPS synthesis; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.416
AHC13717.1
NAD-reducing hydrogenase subunit HoxF.
     
 0.402
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.