Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC15830.1Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (356 aa)    
Predicted Functional Partners:
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 0.995
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 0.986
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 0.981
AHC15831.1
Dipeptide transport system permease protein DppB.
 
 
 0.955
AHC15828.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
 
 
 0.945
AHC15829.1
ABC transporter ATP-binding protein.
 
  
0.911
AHC13753.1
ABC transporter, ATP-binding protein.
 
   
0.907
AHC16276.1
Hypothetical protein.
 
 
 0.905
AHC15581.1
ABC transporter, ATP-binding protein.
 
   
0.903
AHC16760.1
Putative amino-acid ABC transporter ATP-binding protein y4tH.
 
 
   
0.900
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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