Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15897.1Hypothetical protein. (515 aa)    
Predicted Functional Partners:
AHC15896.1
Malate synthase.
 
   
 0.695
AHC15895.1
Isocitrate lyase, group III, Mycobacterial type ICL2.
 
   
 0.691
AHC15379.1
Leucyl/phenylalanyl-tRNA--protein transferase.
  
     0.683
AHC14372.1
Alpha/beta hydrolase superfamily.
  
    0.669
AHC15757.1
Hypothetical protein.
 
  
 0.557
AHC15558.1
Hypothetical protein.
  
     0.514
AHC14368.1
D-alanine-D-alanine ligase.
  
     0.480
AHC14869.1
Putative guanyl-specific ribonuclease.
  
     0.479
AHC15748.1
Adenosylhomocysteinase.
  
  
 0.438
AHC14233.1
Hypothetical protein.
  
    0.426
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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