STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC15935.1ABC transporter protein. (326 aa)    
Predicted Functional Partners:
AHC15934.1
ABC-type multidrug transporter, permease component.
 
 
 0.993
AHC15581.1
ABC transporter, ATP-binding protein.
  
0.801
AHC15004.1
Gliding motility protein GldF.
  
 
 0.793
AHC16415.1
Branched-chain amino acid transport ATP-binding protein LivG.
     
0.787
AHC15932.1
Hypothetical protein.
       0.773
AHC15933.1
Hypothetical protein.
       0.773
AHC15978.1
Amino acid ABC transporter, amino acid-binding/permease protein.
      0.550
AHC16042.1
ABC-type multidrug transport system, permease component.
 
  
 0.529
AHC15931.1
Peptidase, M20/M25/M40 family.
    
 0.486
AHC15936.1
Hypothetical protein.
       0.453
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.