Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16015.1Transposon Tn7 transposition protein tnsC. (552 aa)    
Predicted Functional Partners:
AHC16016.1
Transposon Tn7 transposition protein tnsB.
 
 0.988
AHC16014.1
Transposon Tn7 transposition protein tnsD.
 
 
 
 0.986
AHC16021.1
Transposon Tn7 transposition protein tnsA.
 
 
 
 0.951
AHC16013.1
Transposon Tn7 transposition protein tnsE.
     
 0.811
AHC16017.1
Mobile element protein.
       0.557
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.530
AHC13866.1
Hypothetical protein.
   
   0.482
AHC14171.1
Hypothetical protein.
   
   0.482
AHC14611.1
Hypothetical protein.
   
   0.482
AHC15066.1
Hypothetical protein.
   
   0.482
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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