STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16050.1Hypothetical protein. (1440 aa)    
Predicted Functional Partners:
AHC15332.1
Hypothetical protein.
 
 
0.993
AHC15910.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.986
AHC14706.1
Hypothetical protein.
 
 
0.985
AHC15333.1
Hypothetical protein.
 
 
 0.985
AHC15106.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.983
AHC16393.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
0.982
AHC14163.1
GGDEF domain protein.
 
0.979
AHC14948.1
Two-component hybrid sensor and regulator.
 
 0.979
AHC13471.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
0.978
AHC15521.1
Hypothetical protein.
 
 0.975
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.