Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC16105.1Cobalt-zinc-cadmium resistance protein CzcD. (310 aa)    
Predicted Functional Partners:
AHC15252.1
V-type ATP synthase subunit I.
   
 
 0.597
AHC16104.1
Transcriptional regulator, MarR family.
  
  
 0.591
AHC15498.1
Hypothetical protein.
 
   
 0.543
AHC16535.1
Hypothetical protein.
  
 
 0.521
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.487
AHC16212.1
Hypothetical protein.
   
   0.479
AHC16695.1
Hypothetical protein.
  
 
 0.476
AHC15096.1
Hypothetical protein.
  
    0.436
xylB
Xylulose kinase.
  
    0.436
AHC16030.1
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.409
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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