STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16125.1Histidine ammonia-lyase. (515 aa)    
Predicted Functional Partners:
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.924
AHC16753.1
Histidine ammonia-lyase.
  
  
 
0.923
AHC16348.1
Beta-hexosaminidase.
   
    0.658
AHC14437.1
Ornithine racemase.
  
  
 0.588
AHC15724.1
Agmatinase; Belongs to the arginase family.
  
  
 0.588
AHC16126.1
Hypothetical protein.
       0.570
AHC16127.1
Hypothetical protein.
       0.570
AHC15655.1
Proline dehydrogenase(Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.486
AHC16755.1
Acyl-CoA synthetase, AMP-(fatty) acid ligase.
  
 0.465
AHC13459.1
Glycine dehydrogenase [decarboxylating], glycine cleavage system P2 protein.
   
  
 0.414
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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