Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC16140.1Long-chain-fatty-acid--CoA ligase. (644 aa)    
Predicted Functional Partners:
AHC16375.1
Long-chain-fatty-acid--CoA ligase.
 
  
 
0.719
AHC16683.1
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.717
AHC15687.1
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.712
AHC15728.1
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.701
AHC15822.1
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.612
AHC16139.1
Hypothetical protein.
       0.561
AHC16141.1
Branched-chain amino acid transport protein azlC.
       0.518
AHC16142.1
Hypothetical protein.
       0.518
rplN
LSU ribosomal protein L14p (L23e); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.492
rplE
LSU ribosomal protein L5p (L11e); This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
 
 0.487
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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