STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16153.1Oxaloacetate decarboxylase beta chain. (392 aa)    
Predicted Functional Partners:
AHC16154.1
Pyruvate carboxyl transferase subunit B.
 
 
 0.998
AHC16155.1
Hypothetical protein.
    
  0.976
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
    
 0.933
AHC15976.1
NAD-dependent malic enzyme.
    
 0.922
AHC15730.1
Multifunctional fatty acid oxidation complex subunit alpha.
     
 0.918
AHC16146.1
2-oxoglutarate oxidoreductase, alpha subunit.
    
 0.917
AHC15962.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.916
AHC14356.1
Pyruvate,phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.912
AHC15698.1
Pyruvate,phosphate dikinase.
    
 0.912
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.908
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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