STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16156.1Biotin-protein ligase. (248 aa)    
Predicted Functional Partners:
AHC15336.1
[FeFe]-hydrogenase maturation protein HydE.
  
 
 0.935
AHC15284.1
Hypothetical protein.
  
 0.879
AHC16154.1
Pyruvate carboxyl transferase subunit B.
 
  
 0.843
AHC14516.1
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 
 0.832
AHC14517.1
Biotin carboxylase of acetyl-CoA carboxylase.
 
  
 0.796
AHC15053.1
Substrate-specific component BioY of biotin ECF transporter.
 
   
 0.670
AHC16153.1
Oxaloacetate decarboxylase beta chain.
 
     0.640
AHC14633.1
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA.
  
    0.595
coaX
Pantothenate kinase type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
  
    0.549
AHC13846.1
3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.539
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.