STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16157.1Sodium/glutamate symporter. (472 aa)    
Predicted Functional Partners:
AHC15317.1
Thymidine kinase.
  
     0.668
AHC14322.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.661
AHC16158.1
Hypothetical protein.
       0.625
AHC16159.1
Alpha-galactosidase.
       0.625
AHC15949.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.608
AHC16432.1
Extracellular solute-binding protein, family 1.
  
    0.571
AHC16314.1
Hypothetical protein.
  
     0.551
AHC15213.1
Hypothetical protein.
  
     0.550
AHC15264.1
Pentapeptide repeat family protein.
  
     0.513
AHC16610.1
Hypothetical protein.
  
     0.504
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.