Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC16202.1Signal transduction histidine kinase. (503 aa)    
Predicted Functional Partners:
AHC15332.1
Hypothetical protein.
 
 
 0.854
AHC16037.1
Response regulator.
 
 
 0.805
AHC13894.1
Response regulator.
 
 
 
 0.796
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.768
AHC15617.1
Response regulatory protein.
 
 0.758
AHC14898.1
Response regulator.
 
 
 
 0.716
AHC15080.1
Hypothetical protein.
  
    0.711
AHC16050.1
Hypothetical protein.
 
0.701
AHC14775.1
Two-component response regulator SA14-24.
 
 0.699
AHC15616.1
Sensor histidine kinase/response regulator.
 
 
 0.680
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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