STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family. (554 aa)    
Predicted Functional Partners:
AHC13613.1
Uridine monophosphate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
     0.756
cmk-2
Cytidylate kinase.
  
     0.752
AHC16829.1
Trehalase.
  
     0.698
AHC15334.1
Phosphoglucomutase (femD).
  
    0.688
AHC16204.1
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
       0.668
AHC16205.1
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.668
AHC15233.1
Hypoxanthine-guanine phosphoribosyltransferase.
  
     0.582
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.563
AHC16202.1
Signal transduction histidine kinase.
       0.543
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 0.525
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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