Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC16277.1Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily. (347 aa)    
Predicted Functional Partners:
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 0.990
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 0.990
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 0.990
AHC16276.1
Hypothetical protein.
 
 
 0.978
AHC15831.1
Dipeptide transport system permease protein DppB.
 
 0.916
AHC14129.1
Oligopeptide transport system permease protein OppB.
 
 0.912
AHC14170.1
Ferric iron ABC transporter, ATP-binding protein.
 
    
0.909
AHC15581.1
ABC transporter, ATP-binding protein.
 
   
0.902
AHC14040.1
ATPase component of energizing module of ECF transporter.
 
    
0.900
AHC16275.1
Oligopeptide transport system permease protein OppB.
  
 
 0.899
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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