Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16348.1Beta-hexosaminidase. (519 aa)    
Predicted Functional Partners:
AHC16111.1
Beta-galactosidase.
 
 0.960
AHC16112.1
Beta-galactosidase.
 
 0.952
AHC16585.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 0.952
AHC16110.1
Alpha-galactosidase.
    
 0.907
AHC16159.1
Alpha-galactosidase.
    
 0.907
AHC16434.1
Beta-mannosidase.
 
 
 0.773
AHC16125.1
Histidine ammonia-lyase.
   
    0.689
AHC16753.1
Histidine ammonia-lyase.
   
    0.689
AHC15744.1
Autolysin sensor kinase.
  
    0.613
AHC15983.1
N-acetylglucosamine-6-phosphate deacetylase.
   
 0.580
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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