Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16379.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
AHC16569.1
Hypothetical protein.
  
     0.771
AHC15489.1
Hypothetical protein.
  
     0.637
AHC16296.1
Hypothetical protein.
 
  
 0.591
AHC16679.1
Hypothetical protein.
 
     0.590
AHC13510.1
Phage shock protein A.
 
  
 0.573
AHC16051.1
Sulfate transport system protein cysZ.
  
     0.544
AHC16377.1
SAM-dependent methyltransferase.
  
    0.530
AHC16378.1
Hypothetical protein.
       0.527
AHC16380.1
Hypothetical protein.
       0.504
AHC14902.1
Putative DNA helicase.
  
     0.500
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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