Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16384.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
AHC13572.1
Peptidyl-prolyl cis-trans isomerase.
   
 0.899
AHC16382.1
Hypothetical protein.
  
 
 0.866
AHC14088.1
Endonuclease.
   
 0.834
AHC14400.1
Hypothetical protein.
    
 0.819
AHC16383.1
Serine/threonine protein kinase.
       0.816
AHC16385.1
Hypothetical protein.
     
 0.798
AHC14964.1
Hypothetical protein.
   
 0.792
AHC15300.1
Ankyrin.
   
 0.792
AHC14722.1
Hypothetical protein.
   
 0.767
AHC15995.1
Hypothetical protein.
   
 0.767
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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