Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC16400.1Oligopeptide transport system permease protein OppB. (379 aa)    
Predicted Functional Partners:
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 0.991
AHC16397.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.975
AHC16398.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.974
AHC16401.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
 
 
 0.964
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 0.957
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 0.953
AHC15828.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
 
 0.950
AHC16276.1
Hypothetical protein.
 
 
 0.950
AHC16278.1
Oligopeptide transport ATP-binding protein OppF.
 
 0.939
AHC15829.1
ABC transporter ATP-binding protein.
 
 
 0.932
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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