Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC16401.1Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA. (604 aa)    
Predicted Functional Partners:
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 
 0.969
AHC16400.1
Oligopeptide transport system permease protein OppB.
 
 
 0.964
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 
 0.894
AHC16276.1
Hypothetical protein.
 
 
 0.887
AHC16397.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.879
AHC15831.1
Dipeptide transport system permease protein DppB.
 
 
 0.878
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 
 0.873
AHC14484.1
(GlcNAc)2 ABC transporter, permease component 1.
 
 
 0.859
AHC14129.1
Oligopeptide transport system permease protein OppB.
 
 
 0.843
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.822
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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