STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16401.1Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA. (604 aa)    
Predicted Functional Partners:
AHC16400.1
Oligopeptide transport system permease protein OppB.
 
 
 0.940
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 
 0.937
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.811
AHC16397.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.811
AHC15831.1
Dipeptide transport system permease protein DppB.
 
 
 0.794
AHC16398.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 0.786
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 
 0.785
AHC16276.1
Hypothetical protein.
 
 
 0.772
AHC14484.1
(GlcNAc)2 ABC transporter, permease component 1.
 
 
 0.761
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 
 0.741
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.