Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC16416.1Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (436 aa)    
Predicted Functional Partners:
AHC16414.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
 0.999
AHC16415.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.999
AHC16417.1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
AHC14058.1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
AHC14060.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.998
AHC14061.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
 0.998
AHC15342.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.998
AHC15343.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
 0.998
AHC16418.1
Branched-chain amino acid ABC transporter, amino acid-binding protein.
 
 
 0.996
AHC15340.1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.989
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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