Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC16417.1High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (302 aa)    
Predicted Functional Partners:
AHC16416.1
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
AHC16415.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.997
AHC16418.1
Branched-chain amino acid ABC transporter, amino acid-binding protein.
 
 0.996
AHC15341.1
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
0.995
AHC16414.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
 0.995
AHC14060.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.987
AHC14059.1
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
AHC15342.1
Branched-chain amino acid transport ATP-binding protein LivG.
 
 0.985
AHC14061.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
 0.981
AHC15339.1
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
 
 
 0.979
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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