Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16453.1Hypothetical protein. (3581 aa)    
Predicted Functional Partners:
AHC13872.1
Hypothetical protein.
 
 
 
 0.820
AHC16454.1
Hypothetical protein.
 
    
0.785
AHC15498.1
Hypothetical protein.
 
     0.783
AHC15311.1
YD repeat protein.
 
  
 0.748
AHC13823.1
Hypothetical protein.
  
   
 0.746
AHC14404.1
Hypothetical protein.
  
     0.746
AHC16475.1
Cell division protein FtsX.
  
   
 0.734
AHC14737.1
Pheromone cAD1 precursor lipoprotein Cad.
  
     0.723
AHC15803.1
Arylsulfatase regulator.
 
     0.712
AHC15994.1
Serine/threonine protein kinase related protein.
  
   
 0.679
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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