Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC16479.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
AHC16477.1
UDP-glucose dehydrogenase.
  
  
 0.843
AHC16481.1
Aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.836
AHC16480.1
Glycosyltransferase.
 
     0.832
AHC16478.1
UDP-glucose 4-epimerase.
  
  
 0.799
AHC16486.1
Polysaccharide biosynthesis protein.
 
  
 0.753
AHC14467.1
UDP-N-acetylglucosamine 4,6-dehydratase.
 
  
 0.607
AHC14466.1
Putative aminotransferase, DegT family; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.598
AHC16474.1
ABC transporter associated permease.
  
    0.574
AHC16475.1
Cell division protein FtsX.
  
    0.574
AHC16476.1
Hypothetical protein.
       0.571
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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