STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16481.1Aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (374 aa)    
Predicted Functional Partners:
AHC14467.1
UDP-N-acetylglucosamine 4,6-dehydratase.
  
 0.881
AHC16479.1
Hypothetical protein.
 
  
 0.836
AHC16482.1
Myo-inositol 2-dehydrogenase.
  
 0.822
AHC16480.1
Glycosyltransferase.
 
  
 0.802
AHC16478.1
UDP-glucose 4-epimerase.
  
  
 0.757
AHC16477.1
UDP-glucose dehydrogenase.
  
  
 0.731
AHC14424.1
Oxidoreductase domain protein.
 
  
 0.719
AHC16489.1
UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.660
AHC16488.1
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase.
  
  
 0.657
AHC16492.1
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.623
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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