Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16496.1Response regulator LiaR. (205 aa)    
Predicted Functional Partners:
AHC14491.1
Sensor histidine kinase LiaS.
 
 
 0.936
AHC15332.1
Hypothetical protein.
 
 
 0.885
AHC16050.1
Hypothetical protein.
  
 
 0.874
AHC16497.1
Hypothetical protein.
       0.773
AHC14706.1
Hypothetical protein.
  
 
 0.771
AHC16498.1
Polysaccharide export protein.
  
  
 0.751
AHC16719.1
Hypothetical protein.
  
     0.714
AHC16499.1
Hypothetical protein.
       0.684
AHC15759.1
Sensory box histidine kinase/response regulator.
 
 
 0.616
AHC14164.1
Hypothetical protein.
 
 
 0.615
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.