Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC16520.1Transcriptional regulator, LacI family. (321 aa)    
Predicted Functional Partners:
AHC14828.1
Glutamate synthase [NADPH] large chain.
    
 
 0.743
AHC16519.1
Extracellular solute-binding protein, family 1.
 
  
 0.594
AHC15536.1
Phosphotransferase system, phosphocarrier protein HPr.
   
 
 0.520
AHC16634.1
Phosphotransferase system, phosphocarrier protein HPr.
   
 
 0.520
AHC16522.1
Transcriptional activator MetR; Belongs to the LysR transcriptional regulatory family.
     
 0.490
AHC16521.1
Hypothetical protein.
       0.476
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.475
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.473
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.469
AHC14403.1
Putative alpha-dextrin endo-1, 6-alpha-glucosidase.
  
     0.461
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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