Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC16545.1Putative hydrolase. (333 aa)    
Predicted Functional Partners:
AHC16546.1
Glycosyl transferase group 1.
 
 
 0.902
AHC16542.1
Peptidase T.
 
  
 0.884
AHC16543.1
Hypothetical protein.
 
    0.872
AHC16541.1
Putative sucrose phosphorylase.
 
     0.656
AHC16544.1
Hypothetical protein.
 
 
 0.565
AHC15718.1
Hypothetical protein.
 
     0.524
AHC13756.1
Hypothetical protein.
 
     0.521
AHC15070.1
Hypothetical protein.
 
    0.492
AHC14350.1
Hypothetical protein.
 
     0.491
AHC13949.1
Lipase class 3 family protein.
  
     0.472
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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