STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16548.1Anti-sigma F factor antagonist, anti sigma b factor antagonist; Belongs to the anti-sigma-factor antagonist family. (114 aa)    
Predicted Functional Partners:
AHC16549.1
Serine-protein kinase RsbW.
  
 
 0.965
AHC16547.1
Serine phosphatase.
 
 
 0.947
AHC16604.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.868
AHC16601.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.867
AHC13710.1
Anti-sigma B factor RsbT.
  
 
 0.866
AHC16603.1
Serine-protein kinase RsbW.
  
 
 0.854
AHC15332.1
Hypothetical protein.
  
  
 0.845
AHC13471.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.838
AHC16050.1
Hypothetical protein.
 
  
 0.820
AHC16462.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.780
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.