Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC16602.1Anti-sigma F factor antagonist, Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (112 aa)    
Predicted Functional Partners:
AHC16603.1
Serine-protein kinase RsbW.
  
 
 0.958
AHC16601.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.957
AHC16604.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.916
AHC16547.1
Serine phosphatase.
 
 
 0.878
AHC13710.1
Anti-sigma B factor RsbT.
  
 
 0.855
AHC16549.1
Serine-protein kinase RsbW.
  
 
 0.847
AHC15332.1
Hypothetical protein.
 
  
 0.838
AHC16050.1
Hypothetical protein.
 
  
 0.768
AHC14589.1
Flagellar hook protein FlgE.
   
    0.760
AHC14817.1
Flagellar protein FlgJ (peptidoglycan hydrolase).
   
    0.760
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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