Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16617.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
AHC16569.1
Hypothetical protein.
  
     0.770
AHC15489.1
Hypothetical protein.
  
     0.608
AHC13510.1
Phage shock protein A.
 
  
 0.590
AHC16296.1
Hypothetical protein.
 
  
 0.581
AHC16616.1
Hypothetical protein.
       0.564
AHC14902.1
Putative DNA helicase.
  
     0.502
AHC16051.1
Sulfate transport system protein cysZ.
  
     0.478
AHC13824.1
Protease IV.
  
     0.474
AHC15973.1
Hypothetical protein.
  
     0.432
rny
Hydrolase (HAD superfamily); Endoribonuclease that initiates mRNA decay.
  
     0.401
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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