Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16632.1Hypothetical protein. (585 aa)    
Predicted Functional Partners:
AHC16631.1
Nitrogen regulation protein NtrX.
 
 0.991
AHC15333.1
Hypothetical protein.
 
 
 0.886
lexA
SOS-response repressor and protease LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
       0.817
AHC14775.1
Two-component response regulator SA14-24.
 
 
 
 0.801
AHC15332.1
Hypothetical protein.
 
 
0.778
AHC14333.1
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
 
 
 0.772
AHC16392.1
Two-component response regulator.
  
 
 
 0.736
AHC15617.1
Response regulatory protein.
 
 
 
 0.719
AHC16629.1
DNA polymerase III delta subunit.
       0.713
AHC14853.1
Response regulator.
 
 
 
 0.689
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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