STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16669.1Signal transduction histidine kinase. (567 aa)    
Predicted Functional Partners:
AHC15332.1
Hypothetical protein.
 
 0.985
AHC16050.1
Hypothetical protein.
 
 0.970
AHC15910.1
Chemotaxis protein methyltransferase CheR.
 
 
0.958
AHC16393.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.941
AHC15279.1
Positive regulator of CheA protein activity (CheW).
  
 
 0.906
AHC15486.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
0.902
AHC15106.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.897
AHC14969.1
Ammonium transporter.
  
 
 0.891
AHC16043.1
Hypothetical protein.
 
 
 0.891
AHC14706.1
Hypothetical protein.
 
 
 0.890
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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