Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AHC16721.1Putative sigma factor-like phosphatase. (671 aa)    
Predicted Functional Partners:
AHC16037.1
Response regulator.
 
   
 0.780
AHC15332.1
Hypothetical protein.
 
 
 0.764
AHC13894.1
Response regulator.
 
   
 0.761
AHC16283.1
Hypothetical protein.
  
 
 0.755
AHC14048.1
Sensor histidine kinase.
  
 
 0.720
AHC16117.1
Signal transduction histidine kinase.
  
 
 0.703
AHC15080.1
Hypothetical protein.
  
     0.655
AHC15601.1
Sensory box histidine kinase.
 
 
 
 0.623
AHC16393.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.611
AHC15791.1
Hypothetical protein.
 
   
 0.589
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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